PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 300aa    MW: 33702.1 Da    PI: 8.1318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066217239223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+  Fs+   L +H ++ H
  XP_016474842.1 217 QCPQCSLKFSSVAALISHVQKiH 239
                     7******************9988 PP

2zf-C2H216.13.3e-05251273223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+k F+++ +L+ H  + H
  XP_016474842.1 251 VCPRCSKGFRDPVSLVEHVEReH 273
                     7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.45E-11752No hitNo description
PROSITE profilePS510397.5141059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.8E-91153IPR000058Zinc finger, AN1-type
SMARTSM001540.00421352IPR000058Zinc finger, AN1-type
PfamPF014288.3E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.8E-1090148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.16E-993149No hitNo description
PROSITE profilePS510397.83298145IPR000058Zinc finger, AN1-type
SMARTSM001540.026101142IPR000058Zinc finger, AN1-type
PfamPF014285.9E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.017216239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.6E-5217269No hitNo description
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
SMARTSM003557.2250273IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGTPAFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVFCLDHR SYNRHHCPKA NKNDVTVVVC  60
PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVPGCREIL TFSNTIKCRE  120
CTIDHCLKHR FGPDHKCPGR KKPESAFQFM NFRTGNRKDE PKKPSATSSS SWATNLFKAA  180
EAGMSKLSSE FSQTLQMGKE GSSATNRNGS GSGQVEQCPQ CSLKFSSVAA LISHVQKIHE  240
KNGVMNLTVD VCPRCSKGFR DPVSLVEHVE REHRXGVEEL QYVLGIYLWE LHQGNINSHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-167HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474842.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ0D5B91e-118SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLM1C6L81e-171M1C6L8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000608871e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-113C2H2 family protein